So I expect in this cases the guesses were wrong and the Standard Model will manage to explain that as well.
In its current agreed upon form it's just SU(3)xSU(2)xU(1). This gauge symmetry defines the lagrangian, which has 19 parameters to be determined by experiment.
It's true that this isn't the whole story (dark matter etc), but these symmetries are physically motivated and their predictive power is pretty amazing (the QED part is CORRECT as far as any experiment has been able to check so far).
So it's not quite as bad as "you just hit the model until it says what you want it to say". It's more "your shortcut broke so take less of a shortcut and you may discover that the standard model worked better all along than your shortcut". Which, again, has already happened multiple times.
In fact it is quite frustrating to physicists that the standard model always wins these fights. They'd love for it to break in some concrete manner, which is why they're always going on about this break or that break. As it stands now, in some sense, every time the standard model is vindicated it's a worst-case scenario for particle physics. It's not like there's a cartel trying to defend it... everyone would love to be the one who definitively broke it! It's virtually a guaranteed Nobel prize.