You're misinterpreting OP.
OP is saying that the models have not been trained on particular MCP use, which is why MCP servers serve up tool descriptions, which are fed to the LLM just like any other text -- that is, these descriptions consume tokens and take up precious context.
Here's a representative example, taken from a real world need I had a week ago. I want to port a code base from one language to another (ReasonML to TypeScript, for various reasons). I figure the best way to go about this would be to topologically sort the files by their dependencies, so I can start with porting files with absolutely zero imports, then port files where the only dependencies are on files I've already ported, and so on. Let's suppose I want to use Claude Code to help with this, just to make the choice of agent concrete.
How should I go about this?
The overhead of the MCP approach would be analogous to trying to cram all of the relevant files into the context, and asking Claude to sort them. Even if the context window is sufficient, that doesn't matter because I don't want Claude to "try its best" to give me the topological sort straight from its nondeterministic LLM "head".
So what did I do?
I gave it enough information about how to consult build metadata files to derive the dependency graph, and then had it write a Python script. The LLM is already trained on a massive corpus of Python code, so there's no need to spoon feed it "here's such and such standard library function", or "here's the basic Python syntax", etc -- it already "knows" that. No MCP tool descriptions required.
And then Claude code spits out a script that, yes, I could have written myself, but it does it in maybe 1 minute total of my time. I can skim the script and make sure that it does exactly what it should be doing. Given that this is code, and not nondeterministic wishy washy LLM "reasoning", I know that the result is both deterministic and correct. The total token usage is tiny.
If you look at what Anthropic and CloudFlare have to say on the matter (see https://www.anthropic.com/engineering/code-execution-with-mc... and https://blog.cloudflare.com/code-mode/), it's basically what I've described, but without explicitly telling the LLM to write a script / reviewing that script.
If you have the LLM write code to interface with the world, it can leverage its training in that code, and the code itself will do what code does (precisely what it was configured to do), and the only tokens consumed will be the final result.
MCP is incredibly wasteful and provides more opportunities for LLMs to make mistakes and/or get confused.