Beaware though, it's a 8000+ lines of code js file that is very badly organized, it's by no mean a reference for good quality code. However I find writing everything by hand easier in the long term than using already existing libraries for example.
The code includes all the math functions, mesh primitive generation, shaders and even a sketchy text renderer using sdf fonts.
If I had to make it again I would use typescript, type errors were the biggest source of bugs.
I'm a big fan of zero-dependency code (or at the very least with any dependency vendored/hosted locally), it means this page will still work and look as it does today in 25 years time.
I don't know if TS runs natively in browsers yet, but v8 / NodeJS does support it (just strips off Typescript specific tokens).