There are a couple other advantages that are unstated in the article, yet very important from a software design perspective:
1) Indices are a lot more portable across different environments than pointers. They can be serialized to disk and/or sent over the network, along with the data structure they refer to. Pointers can't even be shared between different processes, since they're local to an address space by design.
2) Indices enable relocation, but pointers restrict it. A struct that stores a pointer to itself cannot be trivially moved/copied, but a struct containing an integer offset into itself can. A live pointer to an object pool element prevents the object pool from being safely moved around in memory, but an index into the object pool does not impose such restriction.
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