We should have the ability to run any code we want on hardware we own

This makes the point that the real battle we should be fighting is not for control of Android/iOS, but the ability to run other operating systems on phones. That would be great, but as the author acknowledges, building those alternatives is basically impossible. Even assuming that building a solid alternative is feasible, though, I don't think their point stands. Generally I'm not keen on legislatively forcing a developer to alter their software, but let's be real: Google and Apple have more power than most nations. I'm all for mandating that they change their code to be less user-hostile, for the same reason I prefer democracy to autocracy. Any party with power enough to impact millions of lives needs to be accountable to those it affects. I don't see the point of distinguishing between government and private corporation when that corporation is on the same scale of power and influence.

Remember, the law provides patent, copyright, trade mark, and NDA protection.

While it would be a burden to require a degree of openness, it's not like companies are all rugged individualists who would never want to see legal restrictions in the field.

It's just a question of what is overall best and fairest.

Restrictions can both help and hinder innovation, and it's innovation that in the ling run makes things improve IMO.