OSs need to stop letting applications have a free reign of all the files on the file system by default. Some apps come with apparmor/selinux profiles and firejail is also a solution. But the UX needs to change.
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As an administrator, I'm constantly being asked by developers for sudo permission so they can "install dependencies" and my first answer is "install it in your home directory" sure it's a bit more complexity to set up your PATH and LD_LIBRARY_PATH but you're earning a six-figure salary, figure it out.