Quite a few of those still exist!
* Wysteria Vine. It is not written, but I am pretty sure it's Kameido Shrine. You need to come at the right time to see flowers like that though.
* Nikko All pictures that show shrine and pagoda
* Osaka Castle
* Daibutsu, at Kamakura
* Jinrikishia Now it's for tourists, but you can ride in Asakusa.
* View Ojigoku on Great Boiling Springs, Hakone.
* Wrestlers. Sumo still exists and looks like that.
* Gion Machi Street, at Kyoto. Looks a bit different, but there are still many old houses like this.
* View of Nara.
* Tennojo Buddhist Temple
* Hakone Lake of Fujiyama
What does not exist anymore is any picture showing a town or village. I feel sad about this. There are a very few places that kept this (E.g. Shirakawago). Now all houses look boring. Only recently people thought to build pretty houses again.