My 2 cents, it's hard for me to believe there is any animosity there.
You don't have to take my word for it, you can just see what he says and does.
But I've seen nearly every one of his videos and blog posts, read through many previous comments on HN, there's not a single disparaging remark in any of them. In fact he even makes his philosophy clear in this post [1]:
Things that I, at least, always do without even thinking about it. For instance, when I mention Scryer Prolog in Internet discussions, I always try to mention at least one other Prolog system too in a flattering way, out of respect and admiration for other systems and also to encourage more cooperation between systems.
What I gather is Markus strongly advocates for ISO compliant Prolog implementations and especially open source ones, because that's where his heart is right now. But one thing to remember is that Markus has also contributed 10s of thousands of lines of code to SWI (check out the author tag in many of the SWI libraries), has co-authored authored many papers with Jan Wielemaker, and there is plenty of professional respect there. This is like trying to understand the nuance reasons why Steven Hawking disagrees with Einstein (or whoever) on something. Probably in agreement about 99.999% of most things but strong disagreement on a 0.001% that probably doesn't matter much to you and I about whether or not black holes are Humperdink-Blazensort compliant or...
waves hands stuff.
As you've seen from the comments though, SWI is an extremely successful, established system. Nearly every book and example you will read uses SWI. It has great libraries, great IDEs, FFI, embedding, support, documentation, all kinds of great stuff -- SWI is already REALLY successful, and for very good reasons!
So my guess is just trying to give a voice to the little guys who are up and coming and are in line philosophically with his beliefs about the language and open source. I personally would describe that as "support", I don't think I would use the word "animosity".
[1]: https://github.com/mthom/scryer-prolog/discussions/2605