Hasn't this always been a bit of an issue? Apps with root privileges have been able to get around Little Snitch for as long as I can recall. Some software relies specifically on that ability.
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Up until recently, Little Snitch monitored network traffic in kernel space.
If an application is running as root, you are similarly able to use the lower level APIs and completely "bypass" Little Snitch. I cannot find a good alternative source for this other than the Security and Privacy Guide [0]:
It is worth noting that these firewalls can be bypassed by programs running as root or through OS vulnerabilities (pdf), but they are still worth having - just don't expect absolute protection.
[0] https://github.com/drduh/macOS-Security-and-Privacy-Guide#th...