MacBooks are metal. When you put them in the freezer, the likelihood of moisture damage, especially around very hot components, is much higher than if you try this with a plastic electronic device. I wouldn't put metal laptops in the freezer, as damage to small sensors could be your issue. In fact, anything with thermal paste really shouldn't go in the freezer. But too late to undo that, you can stop doing it though.
The way macOS/ firmware handles cooling can be confusing. Have you tried rebooting in single user mode and checked the temps from there? Have you ran the hardware diagnostics from boot?