Personally I also like to have a local snapshot using rsnapshot of live/ephemeral data so that I can quickly get a node back in service assuming the backup volume only accessible by root has not been tainted or tampered with. OSSEC is one of the many tools that can checksum data and alert on tampering. AuditD with well written rules is also useful for real time monitoring. Anti-tampering is an entire topic by itself.
I like to keep these concepts outside of configuration management tools but design them so they can be easily pulled into said tools. This makes replacing a tool much easier. So if for example ones company desires switching from Chef to Ansible for whatever reasons the process is already a well known-known allowing a quick semi-automated migration.